Scaffold Ga0126304_10004018

Overview

Basic Information

• Taxon OID: 3300010037
• Scaffold ID: Ga0126304_10004018
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7476
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8693
  • Long. (^o): -122.4282

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018130	Metagenome / Metatranscriptome	236	Y
F021175	Metagenome	220	Y
F057155	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126304_100040181	F018130	AGGAG	VAQEVDTNEQSADQQSRCDIDKILTAEGECRRLGEVQVDGSVLCVCHAELLRLKERSETMLGTVFEMDQWLESVDGEADELRVRRIEHQRNEVIEQLRVDRTHIGLIRDELLKDHDGTT*
Ga0126304_100040183	F057155	N/A	MRVKVLETDRKEELQGKFGVIEHRFGHPEHVALDVWLDDGRLELFLAHGLDSAE*
Ga0126304_100040187	F021175	N/A	MNSEADLIKEIRYLSGLMRQNCHDASWRMERLLSKVEHGESLDTRSTSIQLKEARDELQLLKRGIESIQKLCELESDDS*