Scaffold Ga0131849_115951

Overview

Basic Information

• Taxon OID: 3300009947
• Scaffold ID: Ga0131849_115951
• Source Dataset Name: Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 67 mira
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Center for Advanced Technologies in Genomics, Sao Paulo University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 879
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost → Compost Microbial Communities From Sao Paulo Zoo, Brazil

Source Dataset Sampling Location

• Location Name: Sao Paulo Zoo, Brazil
• Coordinates
  • Lat. (^o): -23.651072
  • Long. (^o): -46.620675

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029085	Metagenome / Metatranscriptome	189	N
F047639	Metagenome / Metatranscriptome	149	Y
F075995	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0131849_1159511	F075995	AGGAGG	MRKYRPLKKANVYITKNFKRVFYGMRTLYVKDHTGRVYINYKNRYYQAHFDGYH
Ga0131849_1159512	F029085	AGGAG	MKDIKNDKLKIDELLEENINEQLENGSSDLVSLIAISELTNLEKLKVITRLKEVQVPLLTKLYMYAETFNVPFMKNLADNILQLQISIRGLGRKELVNIVRESTPTETKRGLFGTKDVFR
Ga0131849_1159513	F047639	N/A	DKSSTITYHLSSKFKPDFLINPDHIFIYNGYRTVIITDKSAETINPLDFNSKFNASDFKTAIESKLIKDTFSTLKPNLFDTTTIILILNLVMTFGILYLLLKGQGVL*