Scaffold Ga0131077_10192258

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0131077_10192258

Scaffold Ga0131077_10192258

Overview

Basic Information
Taxon OID	3300009873 Open in IMG/M
Scaffold ID	Ga0131077_10192258 Open in IMG/M
Source Dataset Name	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Wenshan plant
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Novogene Bioinformatics Technology Co., Ltd
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2188
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater → Activated Sludge Microbial Community Analysis In Wastewater Treatment Plant From Tai Wan

Source Dataset Sampling Location
Location Name	Tai Wan
Coordinates	Lat. (^o)	24.0	Long. (^o)	120.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011832	Metagenome / Metatranscriptome	286	Y
F035819	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0131077_101922581	F011832	N/A	GKEARVARRRIQPKLAVELETVSLRLPVRLVRAVEQYAKYLGGSSDRTHVITQAIEIALAQDADFQKSLDARYAAPAAGPVRATA*
Ga0131077_101922583	F035819	GGAGG	VTTRQEPRTAHKREPKRAIARTISEPGNGSQDSRLCLIGVKVDAALRREIDAYAEAHGVSRSRAAGHYLAIARETIHEREGVPAGRADELMEAVDGLRAAMDILGPPTFGMLRLLAHWASQGGTVKVSEDELLAELRSVGGDEWEQAVAEAERDLQETSSGTAHKGRH*

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