Scaffold Ga0118741_1028839

Overview

Basic Information

• Taxon OID: 3300009853
• Scaffold ID: Ga0118741_1028839
• Source Dataset Name: Wood falls microbial communities from Lacaze-Duthiers Canyon, Mediterranean Sea, France - F3EC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 536
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides uniformis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Benthic → Wood Falls → Wood Falls Microbial Communities From Lacaze-Duthiers Canyon, Mediterranean Sea, France

Source Dataset Sampling Location

• Location Name: Lacaze-Duthiers Canyon
• Coordinates
  • Lat. (^o): 42.4666667
  • Long. (^o): 3.4666667

Associated Families

Family	Category	Number of Sequences	3D Structure?
F100750	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118741_10288392	F100750	AGG	MEHIEDFQKLNIMVKDILEEHRIDVFIGTLMDNIQHDVHLWEPNSLEKAFRLDRKMESKIVATRKPTTRNNKDGSVVSPSLPQPIRKT