Scaffold Ga0126313_10028141

Overview

Basic Information

• Taxon OID: 3300009840
• Scaffold ID: Ga0126313_10028141
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3824
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus africanus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8722
  • Long. (^o): -122.4269

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005471	Metagenome	399	Y
F091478	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126313_100281412	F005471	AGGAGG	MHPQPYPTHQHPEPALHLLGGVWIASCPTCGWQLTTARTQARCERRAARRRCPVCHQDGF
Ga0126313_100281413	F091478	AGGA	MAGCDVLYYDPTHRDPVGHRPGPAGDGWRPCTAPGQAWTDPDLVLRWVCVRHRRQLTALHAAGLADQVRWQRPGLAIGPAPTREATP*