Scaffold Ga0126313_10001018

Overview

Basic Information

• Taxon OID: 3300009840
• Scaffold ID: Ga0126313_10001018
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14313
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (83.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8722
  • Long. (^o): -122.4269

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000756	Metagenome / Metatranscriptome	905	Y
F004101	Metagenome / Metatranscriptome	453	Y
F023048	Metagenome	211	Y
F024965	Metagenome	203	Y
F079702	Metagenome	115	Y
F094919	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126313_1000101812	F024965	N/A	VSAKRIDDLTDLTVQGIWEAHLDGELLEVEAVDQVAVRAAGVLAEKGYWTWMFQAATEDLTSWQDLRWNYWIVDPNNGCIWEWGTV*
Ga0126313_1000101817	F094919	GAGG	MLRSLVAALGFITVLATLIIVGVLMANSLGASLGGGFADDTPSEGATNSVVLRISGTPGVQFSGNYTTPQGSQNISGTLTTTPTEYKLGDRDVAGMSVLTANVQKQGTYGTLKVEILKEGQVIQSAETNATNNAVSVTSSL*
Ga0126313_1000101818	F023048	AGG	MGRVVAGLKDDANHWLTDPGYAALRHRLEAAHAAAEVALVEARRRVRPNER*
Ga0126313_100010185	F079702	GGAG	VLVLLLVWALGDNGSPRRSERVQFDLAQSVSAQAAPADQIPPCERLLREFESDPRTQQASPEERQFVRAFLQAYTQRLLDEGVPGASRLDPDGNGIACDQLRSAGGRQFASDGNVSVRPSVDGGQSASASSSASPQPTADGGNPLLDRFGNLLDAGGPISGPLPLMPDGGCPREFPTKRDGACYAR*
Ga0126313_100010187	F004101	GAG	VGYLLTAADGGASVYLADPEWRALIYVASQHGFSAPHLRLERGGESLDIGEADTKVLRSALGKALEDRDIEEIKTPDGDLAYDTIQRVRHVLLAGGVRLARTPA*
Ga0126313_100010188	F000756	AGGA	MMDRERPGASDSEGKIPEAWIGQEVMLETTEALSSDLRAAAPVYLEDVNDRGVVMLVTRHRDQNQFSRYFYPWSVVGWIRLAEEDERSEP*