Scaffold Ga0130087_1055140

Overview

Basic Information

• Taxon OID: 3300009828
• Scaffold ID: Ga0130087_1055140
• Source Dataset Name: Sorghum rhizosphere soil microbial communities in Albany, CA(condition:control)- sample E
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: QB3 Vincent J. Coates Genomics Sequencing Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 556
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Sorghum Rhizosphere Soil Microbial Communities From California, Usa

Source Dataset Sampling Location

• Location Name: California,USA
• Coordinates
  • Lat. (^o): 37.887207
  • Long. (^o): -122.304401

Associated Families

Family	Category	Number of Sequences	3D Structure?
F083168	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0130087_10551402	F083168	N/A	RRREKNMRRLLALPLVAAVALIAAGVSNAGRTQQTLNCSGLGTITVTVTSTKSDHSVAWGTGKVSSRLHGIPVSFSGTVTDLTTDTLLFSFSQAKGKGHGMHRQQTVTCTSPPVDTTAGEAGIPGVNPTDMVEMDFTAQVVLKP*