Scaffold Ga0105059_1000018

Overview

Basic Information

• Taxon OID: 3300009795
• Scaffold ID: Ga0105059_1000018
• Source Dataset Name: Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_40_50
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13996
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location

• Location Name: USA: Columbia River, Washington
• Coordinates
  • Lat. (^o): 46.372
  • Long. (^o): -119.272

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005305	Metagenome / Metatranscriptome	405	N
F007651	Metagenome / Metatranscriptome	347	N
F023903	Metagenome / Metatranscriptome	208	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105059_100001811	F023903	N/A	MVDLMINHEGKICDNCGDSVDHLVPLNDPTRIGRWWCLKCIYKEGKAKFDADAKNG*
Ga0105059_100001817	F005305	N/A	VEDLEKELGPLIENFQNLVKDAREKKLDSLREDEDFKKEFNQLSKDVIEPMMRKFESYLKSKDVNSSVNIQSQIVAGKNPSIEFSLHFKLTHESRYPNIKFSSSGKKISIQEERLMAKGEVRQDMMPEYYNKEQITEEFVKERLIRLIKSCFDKNWQSFYP*
Ga0105059_100001818	F007651	N/A	VLEKDINPNNLGGWRHVYMLRNHSNYMSNDLNELIARKDKLEGELHHELSADYNELMKKVSESFRDMHENSVQYYKQKANEELDKMEKNIQSGNKLSAINEKLLADTYLSFATTI*