NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126374_11898072

Scaffold Ga0126374_11898072


Overview

Basic Information
Taxon OID3300009792 Open in IMG/M
Scaffold IDGa0126374_11898072 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_12
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)501
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002057Metagenome / Metatranscriptome598Y
F091408Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0126374_118980721F091408GGAGMTERWKVWLITGLTAAVIAAAIYAPILRRRMKRAARMQQQSEEQARRELTQPVPINP
Ga0126374_118980722F002057N/ADLPAVTDTNGFIPWDRAQAPFLALSRKYGDLVQGMLAQRFKGSPDAAQTGTVRQLRTTAAPAIAVEVSSVTVNDRSDLDHMAAGVGDAIARGTVAFKSSYVIPNMPGALP*

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