Scaffold Ga0126374_10008549

Overview

Basic Information

• Taxon OID: 3300009792
• Scaffold ID: Ga0126374_10008549
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_12
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3875
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003682	Metagenome	474	Y
F010023	Metagenome / Metatranscriptome	309	Y
F014558	Metagenome	262	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126374_100085493	F010023	AGG	MLARLDQGAVRQLMTNLKRIQARAGELARSGKFHGWRPIAFELRFEKGYDEAREWLHDAATRDELDCLCQAARAAKNEAA*
Ga0126374_100085494	F003682	N/A	MTELSVAVDRHEIVVSKPSSGFSVTYRRSGRVLVALDPMRNDPAPEELIFLVRAWKAAFAKAQSLGWLN*
Ga0126374_100085495	F014558	GGGGG	MTFVLLRVEYDRYTERAYVEFRAPDGDGGDAITTAIFSYKTAERLSKRRIQEEVVRKARHLLKKASLAT*