Scaffold Ga0115012_10362533

Overview

Basic Information

• Taxon OID: 3300009790
• Scaffold ID: Ga0115012_10362533
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1105
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 2.405
  • Long. (^o): -13.602
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026154	Metagenome / Metatranscriptome	199	Y
F054358	Metagenome / Metatranscriptome	140	N
F090327	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115012_103625331	F090327	N/A	ICNQKKWDLNLFAVNQPSAIFDEWMKTVDPYEDESPYPLRISQITKAWEKIDNVGKINYLSRQTNPRYKEIMKGN*
Ga0115012_103625332	F026154	AGGA	MNGIINFVRFIAYSVGAVAIRKSWNWLTTDVDPIPFTKEFDEEYAQTKAKYIRLTKKKEEYEAYRKNRRTRS*
Ga0115012_103625335	F054358	AGGA	MSSTKTPIRQDEKDYLDHFIETKYDDRKNVLKTEMQDTIDKEAEDNFEAFKDKLKINKMHEEVRVLYEDHKKFANEMDSILLEKKGKLDNAIN