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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009790 Open in IMG/M |
| Scaffold ID | Ga0115012_10026109 Open in IMG/M |
| Source Dataset Name | Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3737 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (76.92%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Tropical Atlantic Ocean | |||||||
| Coordinates | Lat. (o) | 2.405 | Long. (o) | -13.602 | Alt. (m) | Depth (m) | 80 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005547 | Metagenome | 397 | Y |
| F018286 | Metagenome | 236 | Y |
| F059942 | Metagenome | 133 | Y |
| F070089 | Metagenome | 123 | Y |
| F074757 | Metagenome | 119 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0115012_100261092 | F018286 | GGAGG | MNMLTTFVLMGVIDTHDGVFATVELNTNPASNGGPATAVMPVSAFPCEISEGQVFFVVKIHEDQDAQIICQKEDKNVGQPDEPDTCMH* |
| Ga0115012_100261094 | F059942 | GGAGG | VKVGDLISFKPIDFGLEDWSNPSIVTYEYESPNEGLWAIWCDGVFCVIDDKNYEIMYLTGS* |
| Ga0115012_100261095 | F070089 | GGA | MKVGDLVKFESVLNDSMDHHTVEHGLVIQLSKTGHDTLSAQVLFNDGETWWVDSGRLEVVSESR* |
| Ga0115012_100261097 | F005547 | GAG | VLSYLYKEKEMKVWVMQGSYEGEMFSSVHLTQKGCALACIADVLEFHGVDDKDTALSVMNDCYAYTETDGEQTEPFEWDQEKMKNMSSKELWKIFSEWVEISWDRMADRNYNIDAQPMEIQA* |
| Ga0115012_100261099 | F074757 | N/A | MWTWRQKIWFDKKPLVGLVVKVEDNPWQSRREVSSNEKIFYYVKWVQDGPGSRYGKTFHHTDGYFLRNDLKFVKKGDFK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |