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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009789 Open in IMG/M |
| Scaffold ID | Ga0126307_10041944 Open in IMG/M |
| Source Dataset Name | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3555 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | UC McLaughlin Reserve (Lake County, CA) | |||||||
| Coordinates | Lat. (o) | 38.8692 | Long. (o) | -122.4283 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005142 | Metagenome | 410 | Y |
| F007136 | Metagenome | 357 | Y |
| F012851 | Metagenome | 276 | Y |
| F023050 | Metagenome | 211 | Y |
| F095025 | Metagenome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0126307_100419442 | F007136 | N/A | MEGGLMEGGTTARPLDYFALLVGASIVALFSGVVATLCVKFEERRLAWLWAALFFGSALVAAYCLVKLL* |
| Ga0126307_100419443 | F005142 | GGAG | LTEILEAMTRPDSNGTPSLPKRTGPKGLLPSTWLERTLKVAYTDCCGSGQETRGTLLDFYPAGPILNVAGAKTLISWDRLVLCELVED* |
| Ga0126307_100419444 | F012851 | AGG | MEGSEWCWNHHPSYADERRRHGARGGKRGGRGRPIAERGTLRDENADIRRRLLEGELLPNVAAVAIQSLNCDIRAVATTLKAKEQEEVVERLEDLEEALEQRKGEHHYRA* |
| Ga0126307_100419445 | F095025 | GAGG | LEDRAQAIATETQEDQKLERERAIMRMIVDEFARLKASGEFSDADPLAQAVRNVVAAQYAELGEESCQYIAEGWIETLREWTRLDWMVKADRNGAPHA* |
| Ga0126307_100419446 | F023050 | GGAG | MRSWIRRLERDARGHLESFELLDGSTYYYEGLETYKELFLHAYDVQLGDADKWPEPPGVYRKMCEARDPAAVLERFKPEDPERAFVNLAEIYDTDVLVRERRLVPLTHTPVEDLSE* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |