Scaffold Ga0126307_10030814

Overview

Basic Information

• Taxon OID: 3300009789
• Scaffold ID: Ga0126307_10030814
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4122
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8692
  • Long. (^o): -122.4283

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000617	Metagenome	982	Y
F004746	Metagenome / Metatranscriptome	425	Y
F018130	Metagenome / Metatranscriptome	236	Y
F035469	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126307_100308144	F000617	N/A	MLSDVVKERDIDLVEIPKSYEVLDATALGERLGLKRDTVLTYLSRRNFERIPRPNRKLAMGPVWFEGSVNEWEAKRDIGDG*
Ga0126307_100308147	F018130	AGGAG	VAPKGNADEQSADRQPRCEIGKIRKAEGECPRPSEVQFDESLLCVRHAELLRLEDHSETMLREVFRMDQWLESADGQADEADVRRAEHPRSELVEQIRLNRTRIALIDNALLKDPDGTT*
Ga0126307_100308148	F035469	N/A	VQVGSESIDGHNGFGLPFDYQLERDADLLILRRFDGSYVAAFGALGVALFEVELAVWEDAD*
Ga0126307_100308149	F004746	AGG	MVRVKEGHWKRQFAGMKGTVQHLWGNLEHAAVDVLLEDGRSELFWLADLSVVVEDMSN*