Scaffold Ga0126307_10015830

Overview

Basic Information

• Taxon OID: 3300009789
• Scaffold ID: Ga0126307_10015830
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5597
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8692
  • Long. (^o): -122.4283

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002196	Metagenome / Metatranscriptome	584	Y
F003251	Metagenome / Metatranscriptome	497	Y
F075810	Metagenome / Metatranscriptome	118	Y
F088404	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126307_100158302	F075810	GGA	MIETTEALSSDLRASAPVYLEDVNDRGVVMLVTRHNDQSQFSRYFYPWSVIGWIRLAEEDEQAD*
Ga0126307_100158303	F003251	AGCAG	MRQPHSRKGVKLQTKTYTTEKEAKKAAARAYRPAIVRLPNGRYACFQGGDVLPQGARPISRWSADRWRAYD*
Ga0126307_100158304	F088404	N/A	VVEIRGIPFCEACAREQEAYFAIGELTQEETRDLRGEPLSKALGETLGEMLDGMRRRRTDDVAAARRLDLPRVDEPGVSRLRKAKQS*
Ga0126307_100158305	F002196	AGGAGG	MEHVTEDARALIRAAREVHAERHGAHTFLPGTFLPLLEAAKRAGIRSDRQRYYDAIDDLEYEGAIEWDESARYARGDKHYLITRRGLDDLGSAGTVAIQEGQRRLFEG*