Scaffold Ga0126307_10004019

Overview

Basic Information

• Taxon OID: 3300009789
• Scaffold ID: Ga0126307_10004019
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10151
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8692
  • Long. (^o): -122.4283

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012851	Metagenome	276	Y
F023050	Metagenome	211	Y
F029351	Metagenome	188	Y
F048135	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126307_100040191	F048135	AGGAGG	MSVEENKALVRREQAELWNHTGNLDAAAELFAPDRVEDAKQEAANVRRGFPDLESTIEDLIAER
Ga0126307_1000401910	F012851	AGG	MHNSEWCINHDPEQAEVRRRRASKGGKRGGRGRPIAELASLRDENAEIRRRLLEGELLPNVAAVAVQSINTDIRAVGAAMKVREQEELVERLTALEEGLEQNKGGSSRWGA*
Ga0126307_1000401912	F023050	GAGG	MSLRGWIKRLERRAHENLESFELLDGSIYYYDRLETYRELFLHACDLQLGKGEWPEPPEVYRKMCEARDVAEVLERFKPEDPERAFVNLAELYDTDVLVNERRLVPLYHAPVEDLSE*
Ga0126307_100040199	F029351	AGGAG	METADAELDRLISKRASQDRQPDPDELEPFYMESVRRYNARREGEMRVSWREHHQVQAARLRAVLEELIAGHEKQAEKYREQPEGSP*