Scaffold Ga0126307_10000760

Overview

Basic Information

• Taxon OID: 3300009789
• Scaffold ID: Ga0126307_10000760
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21218
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (76.19%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8692
  • Long. (^o): -122.4283

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002239	Metagenome / Metatranscriptome	579	Y
F005278	Metagenome	406	Y
F083871	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0126307_1000076011	F083871	N/A	LQVQPRVIPEGKVMGRAHRSRPHRLGKKLQLIRIRLGLTQSELIKRLAVKNEVLYPSSISLFESDGREPSLPVLLAYSNLSGWTINELVDDKVNLSDAKILKKRPAGIPL*
Ga0126307_100007606	F002239	AGTAG	MWKYILASTLLVVGIVEITLAFHRGLREAVMQTSPVRFKHGESQVFLLAGISALVTGIGILFYGLYF*
Ga0126307_100007607	F005278	AGGAG	MSRTRQLRYEQTLKRTSYLAPALAFVIIILAAAAGKGQSNPAPFTFRAGQSMYIVAFRLIPFPIILDEAEAGRQREYINYDLDAERKVRKRIEEWQFFKVAEKPSQADFVFLVNLDETSIEGLAIPYEAYRRHFKERFDLDALRDAAFGRYLIGPLKLPTLGRLSDRLVKQFREKLAKPGQ*