Scaffold Ga0126307_10000469

Overview

Basic Information

• Taxon OID: 3300009789
• Scaffold ID: Ga0126307_10000469
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25863
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (53.12%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8692
  • Long. (^o): -122.4283

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023132	Metagenome	211	Y
F047897	Metagenome	149	N
F049920	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126307_1000046911	F023132	GGCGG	MTSPVRTALLLVLLLPACGGFATPESPLAHRVEHLKEHGFAVKELAPEGDPIPQATAAVQLDGATATIYAYANEADALRATSAFAAEEQGAPDSVRVPREGQNVYVARAPASGKLPATEFEDVVFTSEEEH*
Ga0126307_100004693	F049920	N/A	MTTKDEPDRRLSALIAALSLNRGELDAAALERLLGLIEATQPSPAKT*
Ga0126307_100004697	F047897	N/A	VGALTESLLRRKPQAGSNRAVETFRFICYLDRIPPHILEDPAFRSLPGAGEVECELEAEDFAGAVAEAIRTLEVDFVHVLGIERLL*