Basic Information | |
---|---|
Taxon OID | 3300009786 Open in IMG/M |
Scaffold ID | Ga0114999_10005702 Open in IMG/M |
Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 14584 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (85.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Arctic Ocean: Canada Basin | |||||||
Coordinates | Lat. (o) | 77.0991 | Long. (o) | -150.2252 | Alt. (m) | Depth (m) | 213 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002078 | Metagenome / Metatranscriptome | 596 | Y |
F010167 | Metagenome | 307 | Y |
F048916 | Metagenome | 147 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114999_1000570213 | F010167 | GGAG | MIFANCNLIQQGEAALFYKFNRSIKGYMITGVLIAPDLKAKLDFSKVWIYFVSEVVRNDDIYCSIVIGIAENSMFSNYIDYHSEIDGLKIYKVDNFLKNKYSSYVKQKERTALGNNL* |
Ga0114999_100057025 | F002078 | AGGAG | MDLSTMFAGQGWFEIAGQVVLVFTALTGALPDKFVQKIPVLGTIWPIFNWLAGNVFNNINHPKGMAASAEVEKEIDEAKAKVRNRTDLPDVLDGV* |
Ga0114999_100057026 | F048916 | N/A | MGCSVGLLTELVAPITNFGLNLYNADTYYSKECAWYEEIKFTSATKQWLTENSPPKEVIKDLSKVARNNDIYKEVCDERTDEDKADQEGEDPFFTEEKVAKLDE* |
⦗Top⦘ |