Scaffold Ga0116178_10230619

Overview

Basic Information

• Taxon OID: 3300009781
• Scaffold ID: Ga0116178_10230619
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_STIC12_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 935
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.84
  • Long. (^o): -87.68

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003987	Metagenome / Metatranscriptome	458	Y
F028538	Metagenome / Metatranscriptome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116178_102306191	F028538	N/A	LRLIDRCEEERRTCIEQAKAAGISKQGSFLLKIRTRKQRTVIPKLFFAKHGAEAFVECATIAIGKAEALLGKAALEDCCEVEVKEIGVTVEYERPENQGEVEG
Ga0116178_102306192	F028538	N/A	MQVRRSSSQRSIRRKIDRCEHERQTCIEQAKIAGVSKLGNYVLKIRTRKNRTVIPKLFFAKHGAEAFVECATIAIGKAETLLGKAALDDCCEVEVKEIGVSVEYVRPEVSE*
Ga0116178_102306193	F003987	GGAGG	VIPSLPCGTFSDGDTPAGAFYVAAFEDGDQTHHVGEYRIETVLRALRALQACGYDDVEVGSIERGGKTHLLLIGLDGEARFGDRQTGCVAVLPVGVE*