NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116156_10109683

Scaffold Ga0116156_10109683


Overview

Basic Information
Taxon OID3300009780 Open in IMG/M
Scaffold IDGa0116156_10109683 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC045_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1595
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)40.12Long. (o)-87.63Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016798Metagenome / Metatranscriptome244Y
F030054Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0116156_101096832F016798N/AMKKLILILLLLVLVSCEKEFKTLQRSYVISNFIELNDDLDYKLIYFCDKYNAFEHFYDIKHTIYNEIGEHNYYKNSKTRMSIVSTTKDTGTCQFQNKTFYYLAKKYNLNNANILNESHQIAVIVQAFADGKQNLWCGYKKYKKYEDK*
Ga0116156_101096833F030054N/AMNKKEKKLFFVILVLLAIFLFSIESIKKKNQIINTNKELISSYKERINSSNLAIDSLQNVIKQAKKVDTIIKYRYKQKIDSIYVYKQGDYISFYDTLLHTNIQKSDTFICFDSISVQKLTIKLVNCNLDSELLANCYIQNNLYANIINIQDSVISLKDSVNASLEAMYKQKVKKVKRQRNVATGVAFIEFLILIGVLAK*
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