Scaffold Ga0105164_10027110

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105164_10027110

Scaffold Ga0105164_10027110

Overview

Basic Information
Taxon OID	3300009777 Open in IMG/M
Scaffold ID	Ga0105164_10027110 Open in IMG/M
Source Dataset Name	Wastewater microbial communities from Netherlands to study Microbial Dark Matter (Phase II) - VDW unchlorinated drinking water
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3185
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated → Wastewater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Netherlands
Coordinates	Lat. (^o)	52.2278	Long. (^o)	5.919	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019378	Metagenome	230	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105164_100271104	F019378	N/A	VYDAAVQGYLLSGVVDEKLQREMITVAAQRVKPQQPVTPERIFDFSFAHRVSEALR*

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