Scaffold Ga0116193_1002136

Overview

Basic Information

• Taxon OID: 3300009768
• Scaffold ID: Ga0116193_1002136
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC115_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15362
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Hong Kong
• Coordinates
  • Lat. (^o): 22.28
  • Long. (^o): 114.17

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070167	Metagenome / Metatranscriptome	123	N
F081379	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116193_10021363	F081379	N/A	MKLTTLGAADALGTPIPVFIPDTYRTRLVTTTTGVVTTPPFDSSEEARPYVKITATQEAAETDLYLYALGNVYEANHIQLHITVGNASESYSIERKEVDLILTINLKTGFQTIAKIVEFIGSINNALGKTIISCSYDTNKSSYSISSAVRTYFKSYRPGRCANLVRILTFDDGVFIGNFPESGDPWKDSNTIVPLASMPLVAGVETYIMLSPNEMLSVSGGGTAGKKVYITPQRNY*
Ga0116193_10021368	F070167	AGGA	MSWLGNALFGQSRLKGYNMTPQQLTQAYTPKTYSVDTSRYTALGEEFLDPYSSRNRGMYNDLKKVGVDAAAQQYLNSMRMQAAGQNPFATGQLQSSLASNLEGTRQAYNSYLNNAYQTGTGLLGYSLQGNLANAAAQNTAAMQGSQAALNYQLQKMQADAAMQMQRSQNQSGFFGGLFGNLVGASPALLFGTQSPAGLLKLLGL*