NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116168_1095164

Scaffold Ga0116168_1095164


Overview

Basic Information
Taxon OID3300009761 Open in IMG/M
Scaffold IDGa0116168_1095164 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Canada - AD_UKC129_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)808
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameCanada
CoordinatesLat. (o)49.25Long. (o)-123.1Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045484Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0116168_10951641F045484N/AIEGEGTFQIVDVVNTYGIYVCDLRKVQRYHHYDRDNLERPRNMTELLQIILDKKIAPLNTNYDFKTWSGGVPTGWSFIETDPSNELTYSLAQVDDGMEITFTKAAGANWSYLTINSADNFTYLANRKYVVVVDYTVTEGQNLAHYSQIRSATQPNDFTRCGLGHLFNAWQFNIPLNFRTQLPSLIVQYPYNATTQPPACRIDFHSLTTCDPLKVVIHSMGLYDVTDFVFESP*
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