Scaffold Ga0116131_1002558

Overview

Basic Information

• Taxon OID: 3300009760
• Scaffold ID: Ga0116131_1002558
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9242
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): 1 to 1.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000208	Metagenome / Metatranscriptome	1593	Y
F001742	Metagenome / Metatranscriptome	643	Y
F002560	Metagenome / Metatranscriptome	548	Y
F004412	Metagenome / Metatranscriptome	439	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116131_100255812	F001742	GAGG	MPDTETGNRGRNKQTIPRIGPEEAARVFAQCERLLDRSPVFVENLRQAGFARFLAPLHDQILELAVQPDSWGERTRARLIAELFAGLRGIPAEDARVEEIVQFSNVVVPCFLLELGRRRQHIEIEFPANPCDSAARFALRAGPSYPVHSVNSEQLVRLVAEAGEELVGLCYFGDQRSREHIEAQLTFESPTTDS*
Ga0116131_10025584	F000208	N/A	MRMAMRIRVTTRADLFEERKQQHIERGYRIEDERPTPVNGLCSFIAVSEIADSGGVGDLVARALNGMAR*
Ga0116131_10025585	F002560	AGGAGG	MVEHNPPPSADSPRPRVIPLPIALYVSGELIFELYDGGRPCRRFSIRWERLVPAKEREPEAAALSSQTGLRTHQD*
Ga0116131_10025589	F004412	AGGA	MENGPSNSEQSLSPEEAAAKAAILAECDRLAEAGITFVAVHFDGSGDEGVNEDIECYATEDYAYEESEAQNANFSYLQEHFETLVPYGYEDGCGGFGDVILNVKTRKITVERNDRFEDYTTSNYEV*