Scaffold Ga0105211_1005862

Overview

Basic Information

• Taxon OID: 3300009758
• Scaffold ID: Ga0105211_1005862
• Source Dataset Name: Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3611_800
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1262
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates
  • Lat. (^o): 0.0014
  • Long. (^o): -33.4979

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050133	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105211_10058622	F050133	GGA	MTEFTMIFQVIGLISFTLQSSIGFVVIPYPTYPLSPVSLLYPSHPLYNTRIIPQSPLLIQPSIIQPSVKPEYSTLTPGLKLSPTRSANVNLTEEDEVPLASTRLRARNLDLCYFLANDIFTSHVPCNPNWGDGTLEGVKQYINELTFEANRMIGENNLRFAWKGPYERHDPDAKSPSNPTQDVLSVAGYGCDAVVFLVFNQFSSDCKTQTTGHEFGGVSYGGMCEQEQGLGYTVVVDQGFLKDAWTGPQILAHHLLLMLTSDLKDTKKTCPARESLLYPQMYPGEQRVDQCVVDKLNRSKVSLRKCMQD*