NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116160_1267204

Scaffold Ga0116160_1267204


Overview

Basic Information
Taxon OID3300009715 Open in IMG/M
Scaffold IDGa0116160_1267204 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNAS2_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)647
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan
CoordinatesLat. (o)43.77Long. (o)142.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080092Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0116160_12672041F080092N/AVFCLILCSISDAVISSSVYANGGSIIVNTDESWETSDNLMRFGTVNDSYEYGGKSQTIVSLGRTGIMKSDSTRVETLGMLNAFDSAGMFSTQTNIPESMCDQSNFIAGYGNQSSSRYPETQTVEGLWGLMGSGPGTTYESQIEVVGTVVGVSVQGTSPQGYLYEDVKGSLKAGLDKNSSTLQYSYSRHDHGLLTSDENKSLDGGFDWLWDTNADE
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