Scaffold Ga0116160_1133605

Overview

Basic Information

• Taxon OID: 3300009715
• Scaffold ID: Ga0116160_1133605
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNAS2_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1028
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin035 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Japan
• Coordinates
  • Lat. (^o): 43.77
  • Long. (^o): 142.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014002	Metagenome / Metatranscriptome	266	Y
F027161	Metagenome / Metatranscriptome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116160_11336052	F027161	AGAAGG	MNEYIKLVLENLNIGYICSVMLIGYIFTKSKLISKLKIQKRWLILTIGLLVAVFYYFIIKINLDVLFFSFITAQFLNLYVAEFIIDYFIKKIKSLLEKS*
Ga0116160_11336053	F014002	N/A	FNFNISELVSIIALLIAIIGGYVNTKIQITKLVEENKTLTEKINNLDKMLSEICKKVDKIKIILAKEGINNDNE*