Scaffold Ga0116166_1012526

Overview

Basic Information

• Taxon OID: 3300009711
• Scaffold ID: Ga0116166_1012526
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNMR2_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4893
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Spirochaetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Japan
• Coordinates
  • Lat. (^o): 36.29
  • Long. (^o): 139.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053725	Metagenome	140	N
F083561	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116166_10125261	F053725	N/A	YLSKQDYRFLKKIHADLNFFSMGCLLRRIILLFLQEYDKLGITGVEMKCSIVTLKLFLRLTNMKKWNKSRELSHFSGNLTPFYKAIYNDCYQVVGFETYY*
Ga0116166_10125265	F083561	N/A	FFSMAKLIRTILEIFIKEYERMGMIGFEKKCGIITLRLFLKLTNIKRWWKSRELSHFDGNTTPFYKAIYNNCYQVIGFETYY*