Scaffold Ga0116192_1000360

Overview

Basic Information

• Taxon OID: 3300009710
• Scaffold ID: Ga0116192_1000360
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC113_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35390
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (68.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Hong Kong
• Coordinates
  • Lat. (^o): 22.28
  • Long. (^o): 114.17

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055453	Metagenome	138	Y
F071209	Metagenome / Metatranscriptome	122	Y
F097281	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116192_100036023	F097281	N/A	MNKQTTQKEAPVNKKEQNAAHTFRVTIRDTAHFYRIVNWLNEHVGKGSDKWTMEGRVLKTLKQGKSLSPKVYIFRVDFDPQSALYLSLI*
Ga0116192_100036032	F071209	AGGA	MEKQEKDLYVPMNELIRNKETSWTFTNINLSYEEISLRGIVMWCMENLEGKWTMLGGNKFGFEDSTDALNFKIRFGL*
Ga0116192_100036037	F055453	N/A	MKIKDVLLESPTDLVARFYKEAGEHYDKFYNPEDAKYKHKNKEYYDKHFKEWFAEEVVPVFTKPVDKPQPEYTVQPKEGKLQSPGYRGLQYALARSGLPYNHHVQKYEGGLPAAMASYMNGARNNNGQ*