Basic Information | |
---|---|
Taxon OID | 3300009710 Open in IMG/M |
Scaffold ID | Ga0116192_1000360 Open in IMG/M |
Source Dataset Name | Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC113_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 35390 |
Total Scaffold Genes | 63 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 43 (68.25%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Hong Kong | |||||||
Coordinates | Lat. (o) | 22.28 | Long. (o) | 114.17 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F055453 | Metagenome | 138 | Y |
F071209 | Metagenome / Metatranscriptome | 122 | Y |
F097281 | Metagenome / Metatranscriptome | 104 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0116192_100036023 | F097281 | N/A | MNKQTTQKEAPVNKKEQNAAHTFRVTIRDTAHFYRIVNWLNEHVGKGSDKWTMEGRVLKTLKQGKSLSPKVYIFRVDFDPQSALYLSLI* |
Ga0116192_100036032 | F071209 | AGGA | MEKQEKDLYVPMNELIRNKETSWTFTNINLSYEEISLRGIVMWCMENLEGKWTMLGGNKFGFEDSTDALNFKIRFGL* |
Ga0116192_100036037 | F055453 | N/A | MKIKDVLLESPTDLVARFYKEAGEHYDKFYNPEDAKYKHKNKEYYDKHFKEWFAEEVVPVFTKPVDKPQPEYTVQPKEGKLQSPGYRGLQYALARSGLPYNHHVQKYEGGLPAAMASYMNGARNNNGQ* |
⦗Top⦘ |