NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114933_10064297

Scaffold Ga0114933_10064297


Overview

Basic Information
Taxon OID3300009703 Open in IMG/M
Scaffold IDGa0114933_10064297 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV12_W25 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2644
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKolumbo volcano, Aegean Sea
CoordinatesLat. (o)36.5275Long. (o)25.4871Alt. (m)Depth (m)495
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003834Metagenome / Metatranscriptome466N
F005743Metagenome / Metatranscriptome391Y
F014069Metagenome / Metatranscriptome266N
F026152Metagenome199Y
F026154Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0114933_100642972F005743GGAGMRNLIVYKVDYVNTSEPYNYRTGKFVRTKRIVMTPDEVDQTDGYWRNHRNVKKKFAKQMMGKEDAYYDSKYRVTRVRKA*
Ga0114933_100642974F026152AGGAGMKSEKKISKTPKFWTAKAWAEHLLHISSFTDAKEVKSVPSNTRKQVSRKSNKSKQSSKAAV*
Ga0114933_100642976F026154AGGAMNGIFNFVRFITYSLAAVSVRKLWNWLNTDVDPIPFTKEFDDEYYQTKTKYIRLTKLKEEHEAYRKSRRSDS*
Ga0114933_100642978F014069AGGAGGMEKAPINERVATKVMPLTKWFVEQYFQTYELMSSDPRFKALPAYNQTSCIATVIIATNNALDKSRDARKSAETLQDISKATEERKAVNE*
Ga0114933_100642979F003834AGGAMSSSKTPIRQDEKDYLDHFIETKYDDRKNVLKTEMQDTIDKEAEDNFEAFKDKLKISKMHDEVRTLYEDHKKFANEMDSILLEKKGKLDNAINVLEDKLDQWKKIRKWKNDIERSLIKEPDELDRLLKKLCHEETERDYYGGPRGKAIQMLDMSKEYCKNLLNAGQSLSTVWGVLDQEMGKEKINTNTIPKPEFL
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