NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116217_10005246

Scaffold Ga0116217_10005246


Overview

Basic Information
Taxon OID3300009700 Open in IMG/M
Scaffold IDGa0116217_10005246 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11434
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007593Metagenome / Metatranscriptome348Y
F047844Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0116217_1000524611F007593AGGMATHTGPWLTSKRLRVHGAIIALCLWSLYLWTCATPGLRDRNGNLKGTDFLHFYTLGSLAAVHRGGDLYDINAQAALAAQRVPQAKGIRYLPLYPPQVSIFFAPLAHFSYGWALILWWS*
Ga0116217_100052463F047844GGAMTRRFLMPGIAVALVCVSTFAWGQGSETSGDSLGDLARQSRAEHASTADAKSSKAQELVDEMQQEQEAAANAPTGFTNYNAGDYRLFVPYPFSLEGRDNGGAVLLGSRLGITNTEVMVGNPIPIPANIINNVSDSDLLNVVRQLAGLHGAQAYCSPIKQGSHRAFRCAWQGNPYLLGHVIWGSMEFIVGSNSLIPVMCVSPDDMHSCTIYDNRGHNTCSDHDRQMYGTDHRKVQAAVNAQVHDEQTTFQMCDQIIYPSIQLKEDIVVHPASIPEKPASGDKTPAVALPVTVGTTPAQEAASGESSGSQGPSLAELARQTRQAPHDKAQATLDSAEGTTAAPPGFQSFVLQYCQNPQQCSEASVVIPEKAEVVSRTNGQYIFKAALDGESVMLYAGPADVNAPYRSLTDSDYIRMRDLANANGWSREKPDSVSTQDLTLDGRPALMTRFRYQRDQKRWWIGERVLIENAGKQFLVGCAAPEEHFADAEALCTTLVNSLRLP*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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