Scaffold Ga0116216_10127597

Overview

Basic Information

• Taxon OID: 3300009698
• Scaffold ID: Ga0116216_10127597
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1565
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009482	Metagenome / Metatranscriptome	317	Y
F066093	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116216_101275971	F066093	AGCAG	VLLTLISTLEAAETNVCTVAANPSGFDHRQVTLKGIVAGLSKSTSRSGHKQMTFLLRSLAGCGGVIVFAQEPATLSNGDYLQVEGIFEMERRRDGSTFHNEMQAMKITTLPR*
Ga0116216_101275972	F009482	GGA	MLKAEMARCFVMAILLIPTPTVADVTSELARCELEAERLYPAPHNKGVQNWPERAANLQKRSENIETCMRRAGYRVTAECSAPLKTYESCMKIADKLMRGPTGSQYRDADWNRICLDNEWDVRTQERLSPDCYQSGSWWRRWLGR*