NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116216_10117605

Scaffold Ga0116216_10117605


Overview

Basic Information
Taxon OID3300009698 Open in IMG/M
Scaffold IDGa0116216_10117605 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1636
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001776Metagenome / Metatranscriptome636Y
F008260Metagenome / Metatranscriptome336Y

Sequences

Protein IDFamilyRBSSequence
Ga0116216_101176052F008260GGAGGMGRAAASRAEEDPGALEELEFHWGSAYHIAVVDGMYTARRLDGKGVPLADPLPAGLRLRIQADYAAMPVPRDLP*
Ga0116216_101176054F001776AGGGGGVRYREDKPEDLDRARAAVAAWRGQNPGGTTEDLVAAIGCQFHPDYGVVLRALLFAADRHQARVITGATGNAVPGQRPS*

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