Scaffold Ga0116216_10113586

Overview

Basic Information

• Taxon OID: 3300009698
• Scaffold ID: Ga0116216_10113586
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1667
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001142	Metagenome / Metatranscriptome	766	Y
F008260	Metagenome / Metatranscriptome	336	Y
F041085	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116216_101135861	F008260	GGAGG	MGRAAASRAEGDTGALEELEFHWGSAYDIALADGMWTARRRDGRGGTLADPLPEGLRLRIQADYAAMPVPRDLP*
Ga0116216_101135863	F001142	AGGAG	MTAAGQAGGSQPRGVFEVDEGRALAELELAWADGGYHGFSADSGIWSAISNAGDVLTGGTPDALTQKIGAHWQAMQ*
Ga0116216_101135864	F041085	AGG	MHGNRAALSLVPDEEDQVPRLERFRAAHPEVVILLRGALPRAWVGGRKIERPTLRGLLDELEEIFSPDAQANHPGASQ*