Scaffold Ga0116231_10023618

Overview

Basic Information

• Taxon OID: 3300009697
• Scaffold ID: Ga0116231_10023618
• Source Dataset Name: Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum magellanicum MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6094
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008289	Metagenome	335	Y
F074296	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116231_1002361813	F008289	N/A	MDELFWGREYEDVSDWAERLTMAVEVQDLNADKLFKITKLKLRGRAKEWFRRLQPLLAD*
Ga0116231_100236182	F008289	N/A	MDELFWGRDHEDVSDWAERLGMAAEVRDLNADKLFKITKLNLRGRAQKWFRKLQPAPAD*
Ga0116231_100236184	F074296	GAG	MSSPSGEEIPEELLTQENRELNLVRRFDFWTIQNGPQRGALILRFLGFGIVRIVGINPDQARVGDIAVEVSHGGFYTSARV*