NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116231_10010303

Scaffold Ga0116231_10010303


Overview

Basic Information
Taxon OID3300009697 Open in IMG/M
Scaffold IDGa0116231_10010303 Open in IMG/M
Source Dataset NameHost-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum magellanicum MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15137
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (30.77%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003575Metagenome / Metatranscriptome478Y
F004302Metagenome / Metatranscriptome444Y
F017086Metagenome / Metatranscriptome242Y

Sequences

Protein IDFamilyRBSSequence
Ga0116231_1001030310F003575N/AVHDLNPTCNSNNPNLTIVFFHGIAFGTNDEWKETWTTRRTNNKEKCICWPEKWLPEDLNNNVRILSLSYDSNIVTSVHNDVIEIGKNLIQSLVTNSRCDNPLYLWTH*
Ga0116231_1001030311F004302GGAVALIAYSFGGLILKSLVVEAGKHVHHRPRNSLDDEVHKCCKTFLNNVKGVIFYGVPHAGGTQYLSNYFTWQHQQINTLNKCATQSGLFKSLESFNPQMEHLSTDFKNVVREDLNIYAFSEGLPLDENWVRFSFHHIESY*
Ga0116231_100103039F017086AGTAGMGNSYGLKRKGVDLSQGPPKRKRDVARISAVIETPLVPTENAPSSSEWHSNVVLLLDLIMSFLCTVFSWAFPSYMLKFYFSLLFLFCLCVDNFP*
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