Scaffold Ga0116176_10170911

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0116176_10170911

Scaffold Ga0116176_10170911

Overview

Basic Information
Taxon OID	3300009688 Open in IMG/M
Scaffold ID	Ga0116176_10170911 Open in IMG/M
Source Dataset Name	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_STIC08_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1112
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location Name	USA
Coordinates	Lat. (^o)	41.84	Long. (^o)	-87.68	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024321	Metagenome / Metatranscriptome	206	N
F033819	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116176_101709112	F024321	GGAGG	MLEEILKLIAGMAGLGAFTSMLINLLKVAGLVKDGQADKAFKIADLIVFVIVTVIYLTKTPVDWAQVDEWLVLLTALLGYVVSVFSGEFTHDTIKGTPLIGYSYSEKKLNK*
Ga0116176_101709113	F033819	N/A	EPKQSRVTNTAIQSQLVELSVRLTRMEKDIQEIKKTLFESDKKIGDMEKNEAGRNPLIERRLDNLEKRTDKHEDEIVQLVKITQSLANTNKVLTWVAGLAGAGVLSWLIAQILSLIG*

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