Scaffold Ga0116176_10010946

Overview

Basic Information

• Taxon OID: 3300009688
• Scaffold ID: Ga0116176_10010946
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_STIC08_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6012
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.84
  • Long. (^o): -87.68

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041512	Metagenome / Metatranscriptome	160	N
F047964	Metagenome / Metatranscriptome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116176_100109462	F047964	AGCAG	MEEMMTSKKEMAIILNKIAAVFGKEVDEKLVSVYHLALKNYPRMALADAAMLCVQENNFMPRPKDLLEKIEKNDLEQKWRVVEPSTERTYWVLFREEYETTDDINEIECKEIFGEEYVGAPKLKRAGEMKNISDEERLSQFRKRYQESRNVPQS*
Ga0116176_100109464	F041512	AGGAG	MEKDYRLIRDLDAYVRVRAKKDTTITLKLKAKIAQMSGEELDIAEAYYHQLLASDIRTLGEIGCIELAVELAAWLYPRILREAYAERSKDYMLAP*