Scaffold Ga0114958_10033955

Overview

Basic Information

• Taxon OID: 3300009684
• Scaffold ID: Ga0114958_10033955
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2832
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024058	Metagenome / Metatranscriptome	207	N
F024954	Metagenome / Metatranscriptome	203	N
F032162	Metagenome / Metatranscriptome	180	N
F056412	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114958_1003395511	F032162	N/A	NAYLLEGSIKQINHFFNSIYNWEGTNGKLHDMGNGKAFYFYAHPDDVMHALTKVALHSLVNKINAKGRKGGLLDLAKAKAQSIVDAMGQTCFLWGATSSEGYSLGTITAEKPSDYCGAVSNGRD*
Ga0114958_100339554	F024954	N/A	MKEQMKNTIESLVVGKYYQIENHIAICEMLNSTSNKKCLSRISGVGSVLAFYDEVTEVEMTPELLKQCEERKNGTMNFIGSFNASSKYKGD*
Ga0114958_100339557	F024058	N/A	MRENMRKNMTASEEVIITNSRNTPTYFGEIYLYEGTLVKVSYRTTAGNAVVTFLEGEDKDKVGTINLNNAKLVKENK*
Ga0114958_100339558	F056412	N/A	MKRKTKLEILLGNLDKTSADLKKAVEESQKRLDESFAKYQHKVEVAHHNSMIINEKQIEEII*