Scaffold Ga0114958

Basic Information
Taxon OID	3300009684 Open in IMG/M
Scaffold ID	Ga0114958_10000752 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009684 Open in IMG/M

Scaffold ID

Ga0114958_10000752 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	27254
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	38 (71.70%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

27254

Total Scaffold Genes

53 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

38 (71.70%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000652	Metagenome / Metatranscriptome	959	Y
F007524	Metagenome / Metatranscriptome	349	Y
F007580	Metagenome / Metatranscriptome	348	Y
F014848	Metagenome / Metatranscriptome	259	Y
F019477	Metagenome / Metatranscriptome	229	Y
F022196	Metagenome / Metatranscriptome	215	Y
F041568	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114958_1000075212	F007580	AGGA	MKTVILEKIGHAPEAVYVFLRDHLGRISAHTLGWITIIMLHFASIPTLVAVLLAQSDRLPPVDLMVFVWSALITLFFKSLIERNFLYIATICLGFAAQTLIMGLILFK*
Ga0114958_1000075226	F019477	AGGAG	MGSWLFKDFRIGRMFHLNGNDYVKQSTRTARMLSTGRVFYIGQTELIYPIAY*
Ga0114958_1000075229	F014848	AGGA	MQTYYDELARYERDGFTVIVDKTYEDMHPRDSFDDSCHDIDEICRKIDNGTYDWFMLRVRVMVEGLELGSSYLGGCLYSDARDILTDGVAEDCIWEALNEAKPRVYALKQKFAELSDRVDRETV*
Ga0114958_1000075231	F041568	AGGAG	MFTTENQRALKAELDQMYADQGAAFTAGYLNSMAQEMLMLMPKRQQKAFIRQVATFNGRQLVTVKNCLTGAEVEIRREDRGTVNDPSMERFHSM*
Ga0114958_1000075236	F007524	AGGAG	MARVTKSHAVAINKIMLPLIKTVAYFDADEKDLSMFKMYVDDIAHNVAALHVFNDTLDAAQLHDSIMLQDTLPREHFYAVLKYIEDNNLIRANAFVCKSHA*
Ga0114958_1000075243	F022196	AGGA	MTLPKPIPSSTGGVITFTATGLNHSAGKAYSGRIAAQEAKQKPGKR*
Ga0114958_1000075245	F000652	AGGA	MKKVVVRTELMQELEVPDDWEREHVLDFLSEFQSFRTAFQGVSNEDQTARILDLGVVVETVEQLGEEAYDEQD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114958_10000752

Overview

Ecosystem & Geography

Associated Families

Sequences