Scaffold Ga0116224_10011696

Overview

Basic Information

• Taxon OID: 3300009683
• Scaffold ID: Ga0116224_10011696
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4398
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001133	Metagenome / Metatranscriptome	767	Y
F101670	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116224_100116964	F001133	AGGTGG	MWIEKLSDGVLELDTPIGPRYIQPNLVQRAYLIWTFRNFFSLPQQVLRPWERRLIDRLWSENNFVSMPAVGAHDRPVIGRIERRVPAQAEVLPIRKPMSSSKPAVAEQSRAASA*
Ga0116224_100116966	F101670	GGAGG	VKRCVLRWLLLLLAAGSLQAEQAPPTPASDAIFLWLAGGISSARIQRLVRAQ