Scaffold Ga0123335_1042360

Overview

Basic Information

• Taxon OID: 3300009680
• Scaffold ID: Ga0123335_1042360
• Source Dataset Name: Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2 time_0 SIP DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3170
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Atribacterota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa

Source Dataset Sampling Location

• Location Name: Washington, USA
• Coordinates
  • Lat. (^o): 47.6525
  • Long. (^o): -122.3049

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072892	Metagenome	121	N
F076577	Metagenome	118	N
F093482	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0123335_10423603	F093482	AGGAGG	VEERTLDELWERIEREDPILWAQMEKFYGPMSRKILLMEENRVKHKCKKDWRFEKLIDDWFIQSRLRKHGGKIRR*
Ga0123335_10423606	F076577	N/A	MEIAFHFGAINYESNNGKKRREAWEKFKSNCIDKRLKYINPDPRCTHPVNFDAIDYCWGYAEKIDKGEEINMNELCEGCEFFKKEANNENPTQSN*
Ga0123335_10423607	F072892	GAG	MSTNKEVKMNINLLKTTLTRLFGLYSQFKSIVSDLETNNTLDNREWAQELLNHLSAELYYEANCLTDVICPPQEEEGDEKLFKIDGIINAERNPMSEDEFCELFLKWAEENKLQFGGGLGTYREEEENVLAGK*