Scaffold Ga0115104_10666936

Overview

Basic Information

• Taxon OID: 3300009677
• Scaffold ID: Ga0115104_10666936
• Source Dataset Name: Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - CN13ID_70_C50_10m_0.8um Metatranscriptome (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2721
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 36.1275
  • Long. (^o): -123.299
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019665	Metagenome / Metatranscriptome	228	Y
F019666	Metagenome / Metatranscriptome	228	Y
F021511	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115104_106669362	F019666	AGGAGG	MPHIYIPEIYISQDDYNMIQDNSIPIDAFVAARIRNEEMFVYIQETDCTYKRARNYEWCAELESRIVSNDLSEIPDKRSTICDI*
Ga0115104_106669364	F019665	AGGAGG	MPFNTYIDDKDMIPYLLDYGWVVTHNTWTDCPIPTYTSMKKAYQHNGNAMIFGEMM*
Ga0115104_106669365	F021511	AGGAG	MQDQPNDAVKAVMHSYTPIQVKTLLHNHDEANFVHHQTVDEIVDFYAEHNEDIHHWLLDDSHAFEYYAEAQAAYNIAQGQCTSEKERFEVQNVFLKDVVYIFIATVAYDLAASHGMLDQTMEEVENYQLAIELKLQKEKLKLIQGGKK*