NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116149_1000003

Scaffold Ga0116149_1000003


Overview

Basic Information
Taxon OID3300009675 Open in IMG/M
Scaffold IDGa0116149_1000003 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC057_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)319781
Total Scaffold Genes253 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)111 (43.87%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)41.53Long. (o)-90.43Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038201Metagenome / Metatranscriptome166N
F045016Metagenome153N
F050262Metagenome / Metatranscriptome145N

Sequences

Protein IDFamilyRBSSequence
Ga0116149_1000003216F050262N/AMKIIFHRRQRTSGATLVEMVAAIIILGLVVTGVAQFLLVSKINVYTDNVKTGVLQALSDTIVKCQTMSVGETNVPVGDDLLPHVPSGTMRLEKSGPANGVYTLQGSVTWRAFPHGDDSFLFHEQLTLEVPE*
Ga0116149_1000003226F038201GGCGGMDVFTRNVQYMVSQVAGEHAARTFQMLQATFPGLRNFDQLRTFARLYVFTGLKPLQFRPLPSEVDPQRLKGELALRFHNGMIVLAPEERIVCRGADAYGPFDPVRAARFSRQLSAESPTNDDQGHALDPEACAPAAVGMFPLDLS*
Ga0116149_1000003248F045016N/AMGKRPTRGNVRRGAGVGKKEAMTLAIAQPPGVTGASLVNAACRKYQEAVDKFKRVEAEWQTLPTQEAVMLVVETQGILRETRQLLDQGTSQMTGMNSPEWGEATGHNTRNEVAECLQDAHDLGNRVDDLLAGCDRLIETCLAHQEAYERYQTGKALCIVLAGAILTIGVALYFLLR*

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