Basic Information | |
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Taxon OID | 3300009675 Open in IMG/M |
Scaffold ID | Ga0116149_1000003 Open in IMG/M |
Source Dataset Name | Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC057_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 319781 |
Total Scaffold Genes | 253 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 111 (43.87%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA | |||||||
Coordinates | Lat. (o) | 41.53 | Long. (o) | -90.43 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F038201 | Metagenome / Metatranscriptome | 166 | N |
F045016 | Metagenome | 153 | N |
F050262 | Metagenome / Metatranscriptome | 145 | N |
Protein ID | Family | RBS | Sequence |
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Ga0116149_1000003216 | F050262 | N/A | MKIIFHRRQRTSGATLVEMVAAIIILGLVVTGVAQFLLVSKINVYTDNVKTGVLQALSDTIVKCQTMSVGETNVPVGDDLLPHVPSGTMRLEKSGPANGVYTLQGSVTWRAFPHGDDSFLFHEQLTLEVPE* |
Ga0116149_1000003226 | F038201 | GGCGG | MDVFTRNVQYMVSQVAGEHAARTFQMLQATFPGLRNFDQLRTFARLYVFTGLKPLQFRPLPSEVDPQRLKGELALRFHNGMIVLAPEERIVCRGADAYGPFDPVRAARFSRQLSAESPTNDDQGHALDPEACAPAAVGMFPLDLS* |
Ga0116149_1000003248 | F045016 | N/A | MGKRPTRGNVRRGAGVGKKEAMTLAIAQPPGVTGASLVNAACRKYQEAVDKFKRVEAEWQTLPTQEAVMLVVETQGILRETRQLLDQGTSQMTGMNSPEWGEATGHNTRNEVAECLQDAHDLGNRVDDLLAGCDRLIETCLAHQEAYERYQTGKALCIVLAGAILTIGVALYFLLR* |
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