Scaffold Ga0116173_1023179

Overview

Basic Information

• Taxon OID: 3300009674
• Scaffold ID: Ga0116173_1023179
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC085_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3784
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 39.88
  • Long. (^o): -75.22

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019998	Metagenome / Metatranscriptome	226	N
F042865	Metagenome / Metatranscriptome	157	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116173_10231791	F019998	N/A	AGDYIGIATDSNGLMWYKVNTVVGQVVNLYEVGTTTTASLDYAASANAIVVGFTTLAWQPLRIIEARRVDLSSDIEVPLMIVGKFDYERIPNKAMASIPLWLYAQTMIAETQVFVWPPTAYANWAIGYSFERRYQDVDSGINSMDFPPEAYESLRYGLAARLGDEFPIDPQRQAMLEQKAAGYFTAMRQASSGNASVKFGVRG*
Ga0116173_10231793	F042865	AGGCGG	MALRVPDYETFLAADDFNKRIWWQFMQSVVNDLPLNGNVAPENTVRANKSCLYVESTGGVSVLWFNPNGNGSATGWIVK*