Scaffold Ga0116185_1023786

Overview

Basic Information

• Taxon OID: 3300009673
• Scaffold ID: Ga0116185_1023786
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNNA7_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3684
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Japan
• Coordinates
  • Lat. (^o): 37.43
  • Long. (^o): 138.83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F077341	Metagenome / Metatranscriptome	117	N
F101222	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116185_10237863	F077341	GGAG	MAEMLWGFGGVKFVYGTTEMELPHCAGKLGFQELKNTWRTKSGNLKVQHKGFIPVINITMWNLGISAWGASAFTMSSLIQMLNAAKTEGIMVYPRYEYSNDLGYLCILNSDINPEDFSQNVAAGQTLELSFIGKQKIDNMPTYTTLEGFYYMVDFYDNYLIDHNGNNLILKG*
Ga0116185_10237866	F101222	N/A	MFIKDDIMNVWVAIAINIVVYLVSFAYAWGKLNTKISDIEKRYYELEGKMSDIMECSIQKEQYKSEQQNINRRIDEITSLNIDARLTKIETLLVTILGELKDGKYTK*