Scaffold Ga0123334_1015622

Overview

Basic Information

• Taxon OID: 3300009671
• Scaffold ID: Ga0123334_1015622
• Source Dataset Name: Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1 time_0 SIP DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5594
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa

Source Dataset Sampling Location

• Location Name: Washington, USA
• Coordinates
  • Lat. (^o): 47.6525
  • Long. (^o): -122.3049

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065263	Metagenome	128	Y
F090058	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0123334_101562210	F090058	N/A	MKKYQTGKYYYIKGREIPIYKGKLYIVASNDYEKVEKLIPGFDKWSSGELYAHSFLVTYKGEECIFIILNFDHEFERMTYGDIVHEIRHACDLLAQGRGLNSTPQNTENNAYIEGWIANTVFLELIRWGFVQPLTMKRRKSNGNK*
Ga0123334_10156225	F065263	N/A	MEAALYGKLIISALIVIVAGWLFQDQADRYSGKIARFFQRALTVVIMTAMVVLAGSVVAVIWINN*