Scaffold Ga0116148_1000034

Overview

Basic Information

• Taxon OID: 3300009669
• Scaffold ID: Ga0116148_1000034
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC055_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 145684
• Total Scaffold Genes: 137
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 63 (45.99%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.53
  • Long. (^o): -90.43

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042481	Metagenome / Metatranscriptome	158	N
F045503	Metagenome / Metatranscriptome	152	N
F050854	Metagenome	144	N
F052751	Metagenome	142	N
F069964	Metagenome	123	N
F076776	Metagenome	117	N
F092530	Metagenome	107	N
F096530	Metagenome / Metatranscriptome	104	N
F098523	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116148_100003414	F042481	GGA	MNRPLFAFLSTLTLSTFLVERYAGWYAPGCPVTEMVSLETLRVLFFGFFAVQMLLPFYHWARDPHFTTDTASGLVLFVSIISAVVAFFIYNVPLAALNAIVRLAQFCMNS*
Ga0116148_100003418	F052751	GAGG	MFTRRQSDQAWIKYLLSSGLVTIDQLERMRANQNQVDVGELLVRNSQMFDCEVWLNQALQQDRFHYIPLGTLDERELAELQELLPTIVTRCLSEGILTLGLSCQTFYLGLLRYDPEFPELKEILHSVPAELRVCLVPVSPSDYTRLHQRLRAAASH*
Ga0116148_10000342	F096530	N/A	MSSSENGLVSFPPGTTTCCLGRNGIFTTVGIYVDSFDHKIILTPQHSRRQMARCIIELPNDSRLLLGLILELLKNSPGTLEALQQEFAQTGAPPAQE*
Ga0116148_100003447	F092530	N/A	LWETVGLLSLGALTVVCLMPTLRRDYAGSGLRTSLLATIGACLIYPSAILVYTRKAISQRDGDWKITMFILGITYVLFRLVR*
Ga0116148_10000345	F098523	AGGAG	LGAKLKNVDLEKLRDALQKARIAFTERPVPHVNPATVSLVVQRNGYILSVTPTVYYYGAVVEIRPNGGPRICFHWNKDPAELVAVMDLLVQVRQLTARLRSRWATRQLALITGRGPGSPVLVFQPACARFGIIPRPPSFNQLHKWAAVKEYGLGTSPKIIARDLVQLYQQNTPSRSWRSVVDDWNCKYSVSFGHELTLSASYIYAWNGMRFLLDGDDLALDVWTPVSSAAFREIARLLESIQTVLGKAANEDHLKKLPSV*
Ga0116148_100003454	F069964	N/A	MDIRQLREEKPKLGWLAEVRFGILHNHRKLDELEVLVSAHLKAAGPFKVATRQNLFEFSPDGERVNLVIREGRKPEGLPYQAVPEAVQLFCNEAIILHKNQHLFWHLTEDEVRQLAAEFRDVAGSGSILVKRGRHALLLQIKDGRLDLSACDNL*
Ga0116148_100003455	F076776	N/A	VDLVAKVWASLKPGMEFNLVYGELLSRLENAEDPSMAQAQALLRNPETLMTDHEQKKANAAKARALLREQIVSANIPRQAPDREQLVAETLAFVSRFPALKPSEIKRVTLLRQANGNRDLRTVPFSEVATPESLADDLERAQELDGSPAEAAVHYSASCQTFFLPDNELLPSEKTPVSSPSLAEIA*
Ga0116148_10000346	F045503	N/A	MENMKVKLPKPAPDNQRVREIQQWLSAHGGSVANAYVVNAAALSELGAERGVIEKILWRVPREKPDMQLTAEAMMEMLTPKRLMREVRKQLKIDGKEGLAHTKAFEQSRRQLIASKVSAKTQNREAVIQEVESWFKSVLPEMRDTKAILRATELRLEAGRDIHPVSPPLNTTTEQIEQLNKREPGRVYIDKDGGELLLLKPGEQAMLDEKGLRLQNEAPAMPAPAMS*
Ga0116148_100003460	F050854	GGAGG	MDELLTLAIGKLADHYHVSEDLLKRVLLIRAVAELNALTDRTKPATPEELEAVLTNQNKRLDEVLEGFRTQLVQADNAVQSASLAVAMVERMAAILRAQVEAPAFKSPV*