Scaffold Ga0116180_1055226

Overview

Basic Information

• Taxon OID: 3300009668
• Scaffold ID: Ga0116180_1055226
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC073_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1880
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 37.8
  • Long. (^o): -122.27

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029085	Metagenome / Metatranscriptome	189	N
F047639	Metagenome / Metatranscriptome	149	Y
F075995	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116180_10552262	F075995	AGGAG	MRSRYKPLRKANVFITTKKDFKRVFYGMRTLYAKDCTGKKYIRYKNRYYPVFYDGYHTYIARV*
Ga0116180_10552263	F029085	AGGAG	MKKVKEDKLKIDELLKENISEQLENGSSDLVSLIAISELTNLDKLKVITRLKEEQVPILTKLYMYAETFNIPFIKNMADNILQLQISIRGLGRKELVNIVRESTPTEVKRGLFGTKEVLDKIERSVDNEK*
Ga0116180_10552264	F047639	AGGAGG	MRFFNKHKYLRVIKFNSDKSSSITYHLYSKFKPNFLINPDHIFYYNGYRTVIITDKSAETINPLDFESKFNASDFQTAIESKLLRDTFSTLKHNIFDTPTILLIINLVITLAVLYFLLKSQGVI*